##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index13_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20349123	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.136576303558634	33.0	31.0	34.0	31.0	34.0
2	32.40087123164964	34.0	31.0	34.0	31.0	34.0
3	32.434490960617815	34.0	31.0	34.0	31.0	34.0
4	36.0768051773042	37.0	35.0	37.0	35.0	37.0
5	35.971518674293726	37.0	35.0	37.0	35.0	37.0
6	35.96650995721044	37.0	35.0	37.0	35.0	37.0
7	35.9424122602237	37.0	35.0	37.0	35.0	37.0
8	35.8953623701621	37.0	35.0	37.0	35.0	37.0
9	37.63253399175974	39.0	37.0	39.0	35.0	39.0
10-14	37.86716337603345	39.2	37.2	39.4	35.0	39.4
15-19	38.830826242487205	40.0	38.0	41.0	35.0	41.0
20-24	38.6672384161224	40.0	38.0	41.0	34.0	41.0
25-29	38.33725473083041	40.0	38.0	41.0	34.0	41.0
30-34	38.287280360927596	40.0	38.0	41.0	33.6	41.0
35-39	37.99435217920694	40.0	37.2	41.0	33.0	41.0
40-44	37.913520499138954	40.0	37.0	41.0	33.0	41.0
45-49	37.58932292069786	39.6	36.2	41.0	32.4	41.0
50-54	37.03355452714105	39.0	35.2	40.8	31.2	41.0
55-59	36.3495023151612	38.0	35.0	40.0	30.4	41.0
60-64	35.58376529543804	36.8	34.0	39.8	29.4	41.0
65-69	34.6626991246748	35.4	33.6	39.0	28.4	40.6
70-74	33.66523689497577	35.0	33.0	37.4	26.8	39.6
75-79	32.662329428152745	34.8	31.8	36.2	26.0	38.8
80-84	32.04177834101254	34.8	32.0	35.2	25.4	37.0
85-89	30.95520684601494	34.0	31.0	35.0	22.6	36.0
90	30.01512094648993	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	7.0
12	101.0
13	850.0
14	3873.0
15	10398.0
16	18204.0
17	25853.0
18	33055.0
19	39959.0
20	48511.0
21	57332.0
22	66688.0
23	79940.0
24	96590.0
25	121369.0
26	156816.0
27	201843.0
28	260770.0
29	332564.0
30	420755.0
31	527645.0
32	668058.0
33	863583.0
34	1171591.0
35	1697628.0
36	2658267.0
37	3964851.0
38	4466972.0
39	2317087.0
40	37962.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.877544994992796	12.861323986754053	10.311544925737715	48.94958609251543
2	22.63763897834811	19.400015420811993	35.280984836545535	22.681360764294364
3	25.989321505403453	21.75174330608744	22.896849166423536	29.36208602208557
4	28.014224495080203	28.31719578283546	19.35273082776098	24.31584889432336
5	29.33291077557662	30.334488634677164	21.13768024637168	19.194920343374537
6	23.954339457282753	33.179292296773674	21.610154894636	21.256213351307572
7	21.309267234759947	18.7891193148717	37.66396714000893	22.23764631035942
8	21.491206279504034	22.001223345104357	29.17867762654931	27.3288927488423
9	21.718985137590447	20.90343156311945	31.410488796003637	25.967094503286457
10-14	24.667556434741684	26.286617855717907	24.643737226415112	24.402088483125294
15-19	25.077330359642524	25.113779104878375	25.06248156247323	24.746408973005867
20-24	24.83883556062834	25.354182585657377	25.388542788797334	24.41843906491695
25-29	24.75923643453157	25.381913206732893	25.298326271027143	24.560524087708394
30-34	24.800401033437762	25.29142383333433	25.25552067457877	24.65265445864914
35-39	24.782744988741502	25.433320967554884	25.210711400255992	24.573222643447625
40-44	24.74151766157347	25.266528972714465	25.383886084309992	24.60806728140207
45-49	24.675405908780256	25.321529998207737	25.32276939557362	24.680294697438384
50-54	24.706585618838744	25.408792298113514	25.34659650111263	24.53802558193511
55-59	24.74402476605398	25.332910394959445	25.3021011435701	24.620963695416474
60-64	24.631856452976173	25.353392034961896	25.41513039072725	24.599621121334682
65-69	24.66446003468697	25.455030372575248	25.401365050329645	24.479144542408136
70-74	24.700811530432855	25.41264810295499	25.310728994669248	24.575811371942912
75-79	24.708139504266544	25.363041547649495	25.392520415268226	24.536298532815735
80-84	24.614125469168734	25.490316621557003	25.40316573397565	24.492392175298615
85-89	24.70683835250894	25.48333697020107	25.307167241197416	24.502657436092573
90	24.431052317146364	25.57736820143866	25.509822226562022	24.481757254852955
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.82713108750822
2	45.318999742642475
3	55.35140752748903
4	52.330073389403566
5	48.527831118951156
6	45.21055280859033
7	43.54691354511937
8	48.820099028346334
9	47.686079640876905
10-14	49.06964491786698
15-19	49.823739332648394
20-24	49.257274625545286
25-29	49.31976052223996
30-34	49.453055492086904
35-39	49.35596763218912
40-44	49.34958494297555
45-49	49.35570060621864
50-54	49.24461120077385
55-59	49.36498846147045
60-64	49.23147757431085
65-69	49.143604577095104
70-74	49.27662290237576
75-79	49.244438037082276
80-84	49.10651764446735
85-89	49.209495788601515
90	48.91280957199932
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	1.0
1	3.0
2	3.5
3	4.0
4	5.0
5	3.5
6	3.5
7	7.5
8	19.5
9	39.0
10	50.0
11	68.0
12	104.5
13	173.0
14	288.0
15	505.5
16	984.0
17	1767.5
18	3039.0
19	5434.5
20	7016.0
21	9478.0
22	15926.0
23	26057.0
24	40063.5
25	59191.5
26	83749.0
27	114354.0
28	148387.5
29	184015.5
30	202924.0
31	221072.0
32	260012.5
33	305923.0
34	355283.5
35	402298.0
36	449759.5
37	504509.0
38	554540.0
39	594049.0
40	613587.0
41	625989.0
42	652913.5
43	679340.5
44	695275.5
45	700802.0
46	702106.0
47	701716.5
48	701850.5
49	701226.5
50	700271.0
51	693573.5
52	686671.5
53	677372.0
54	671157.5
55	671793.5
56	662117.5
57	645762.0
58	624437.5
59	597074.5
60	582112.0
61	565407.5
62	531408.0
63	489080.5
64	438456.5
65	388021.0
66	337570.0
67	284709.0
68	235448.5
69	189844.5
70	166247.0
71	146252.0
72	109483.0
73	79077.5
74	53105.0
75	32369.5
76	18765.0
77	10005.5
78	4577.0
79	1880.0
80	1062.0
81	742.5
82	301.5
83	138.0
84	73.5
85	38.0
86	24.5
87	16.0
88	6.5
89	6.0
90	7.0
91	6.0
92	3.5
93	2.5
94	1.5
95	0.0
96	1.0
97	1.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23275695959968398
2	0.0
3	0.0
4	0.0
5	1.5234071758276756E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	4.914216696218309E-5
30-34	0.002435485794645794
35-39	0.005065574570461833
40-44	0.007298594637223431
45-49	0.0025750495488183938
50-54	0.016586464193076036
55-59	0.003388843833712146
60-64	1.1106129733453378E-4
65-69	2.054142579019253E-4
70-74	0.004072902797825734
75-79	0.0015175101157922138
80-84	2.3293387140074784E-4
85-89	5.43512366601745E-4
90	9.828433392436618E-5
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0349123E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.268248900207276
#Duplication Level	Relative count
1	100.0
2	31.117391531899305
3	16.231747527084316
4	9.888522531009578
5	6.753545820903334
6	4.951065054691997
7	3.813262155231067
8	3.1150887109436334
9	2.497514000104674
10++	30.979222274559064
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCTGG	4268965	2.5688841	5.8155746	1
CTTCT	4387615	2.521756	5.265941	1
GAAGA	4312050	2.519879	5.149145	2
AAGAA	4350525	2.4953103	5.167782	2
CTGGA	4072905	2.4100876	8.332636	1
TCCAG	3957630	2.3374593	5.103059	2
CTCCT	3922480	2.3024454	6.5695972	1
CTGGG	3702445	2.2321851	7.916328	1
CAGGA	3733280	2.2186043	5.399323	1
CTTCA	3805435	2.1965418	5.5109386	1
CTCCA	3660170	2.1576972	7.0482435	1
CCCAG	3562190	2.1487212	6.532195	1
CAGAA	3535230	2.062025	5.02515	1
CTCTG	3409205	2.00494	5.914937	1
CTGGC	3141355	1.8903356	5.065579	1
TGGAA	3159560	1.8384924	5.139641	2
CTGAA	3138670	1.822893	5.191638	1
CTCAG	2924420	1.7272239	5.8634634	1
CTTGG	2762655	1.6277758	5.293075	1
>>END_MODULE
